Research Focus

Engineering non-model bacteria to unlock nature's chemical diversity through fundamental and applied research. We pursue both basic science questions - including elucidating biosynthetic mechanisms and discovering new enzymes - and translational goals, including therapeutics and sustainable chemical production. Our integrated approach combines synthetic biology, cell-free systems, and metabolic engineering.

We are grateful to our funding bodies for their continued support and partnership. Past and present funders include the Leverhulme Trust, BBSRC, Royal Society, Wellcome Trust, FAPESP (São Paulo), Biochemical Society, Syngenta, and UKRI-sponsored networks (High-Value Biorenewables, Future Targeted Healthcare and Manufacturing Hub). We are committed to delivering impactful research that advances scientific knowledge and addresses real-world challenges.

Natural Product Biosynthesis

Natural Product Biosynthesis & Engineering

Microbes harbour extraordinary potential to produce complex chemicals encoded within biosynthetic gene clusters (BGCs), yet most remain silent or inactive under laboratory conditions. Our research addresses fundamental questions about pathway regulation and biosynthesis while also developing strategies to unlock silent BGCs. While basic science has a prominent role in our approach, we consider how research can be applied to global challenges including antimicrobial resistance, sustainable crop protection, and replacing petrochemical synthesis with biological alternatives. We specialise in engineering Streptomyces venezuelae, a fast-growing synthetic biology model, to discover and produce novel bioactive compounds.

Our basic research focuses on understanding mechanistic questions such as pathway regulation, single enzyme characterisation all the way through to complex multistep biosynthetic pathways. This fundamental knowledge also enables applied outcomes including enzyme discovery, pathway engineering, and production of high-value chemicals and novel biotherapeutics. We employ synthetic biology tools including CRISPR-Cas9, heterologous expression hosts, and pathway refactoring to both elucidate natural biosynthetic mechanisms and unlock nature's hidden chemical diversity for therapeutic and industrial translation.

Recent Success: Isolation of arcyriaflavin F, a C-5/C-5' dihydroxylated indolocarbazole.

Selected Publications:

  • Hung-En Lai, Agata Kennedy, Lewis Tanner, Emma A. Bartram, Soo Mei Chee, Paul S. Freemont, Simon J. Moore. Biosynthesis of Arcyriaflavin F from Streptomyces venezuelae ATCC 10712. ChemBioChem (2024) 25:e202400357
  • Hung-En Lai, Alan M. C. Obled, Soo Mei Chee, Rhodri M. Morgan, Rosemary Lynch, Sunil V. Sharma, Simon J. Moore, Karen M. Polizzi, Rebecca J. M. Goss, and Paul S. Freemont. A GenoChemetic strategy for derivatisation of the violacein natural product scaffold. ACS Chemical Biology (2021) 16(11):2116
Cell-free Synthetic Biology

Cell-free Synthetic Biology

We pioneer the development of high-yielding cell-free expression systems for academic and industrial purposes, creating extracts from diverse bacteria and optimising systems to achieve high peptide/protein yields (up to 4 mg/mL). Cell-free systems are part of a growing area of research, with a broad variety of applications (e.g., high-value peptides/proteins, high-throughput screening, biosensors, and flexible engineering of pathways). One of the key advantages of cell-free is its capability with high-throughput screening using liquid handling robotics.


Our cell-free toolkits spans model organisms like E. coli to non-model species including Streptomyces venezuelae and Klebsiella pneumoniae, enabling rapid prototyping of biosynthetic pathways and gene expression regulation, without the constraints of living cells. We have established automated platforms for scalable biosynthesis and developed a dedicated Streptomyces cell-free toolkit for natural product discovery.

Key Innovation: We are developing high-yielding and affordable cell-free systems for the engineering of peptides, proteins, and small molecules through cell-free biosynthesis.

As co-organisers of the London Cell-free Biological Products Network, we bring together diverse researchers from academia and industry to discuss cell-free systems at the interface of synthetic biology and biotechnology applications. This network meets twice per year at Imperial and UCL.

Selected Publications:

  • Andrew J. Rice, Tien T. Sword, Kameshwari Chengan, Douglas A. Mitchell, Nigel J. Mouncey, Simon J. Moore and Constance B. Bailey. Cell-free synthetic biology for natural product biosynthesis and discovery. Chemical Society Reviews (2025) 54:4314-4352
  • Kameshwari Chengan, Charlotte Hind, Maria Stanley, Matthew E Wand, Lakshmeesha K Nagappa, Kevin Howland, Tanith Hanson, Rubén Martín-Escolano, Anastasios D Tsaousis, José A Bengoechea, J Mark Sutton, Christopher M Smales, Simon J Moore. A cell-free strategy for the host-specific profiling of antimicrobial sensitivity and resistance. npj Antimicrobials and Resistance 1:16 (2023)
  • Lakshmeesha K. Nagappa, Wakana Sato, Farzana Alam, Kameshwari Chengan, Christopher M. Smales, Tobias Von Der Haar, Karen M. Polizzi, Katarzyna P. Adamala and Simon J. Moore. A ubiquitous amino acid source for prokaryotic and eukaryotic cell-free transcription-translation systems. Front. Bioeng. Biotechnol. (2022) 10:992708
Antimicrobial Research

Antimicrobial Discovery & Resistance Mechanisms

Antimicrobial resistance is a global challenge which we address through an innovative platform: cell-free protein synthesis as a rapid tool for studying antimicrobial sensitivity and resistance mechanisms.

Our BBSRC-funded collaboration with the UK Health Security Agency (UKHSA) focuses on developing alternative antimicrobials and understanding resistance evolution in ESKAPE pathogens, such as Klebsiella pneumoniae and Acinetobacter baumannii. Our cell-free platform enables rapid testing of antimicrobial peptides and proteins, including engineered variants, without the constraints of living cells, allowing quick assessment of new compounds and understanding of resistance mechanism evolution.

Platform Technology: Our cell-free antimicrobial profiling system enables host-specific testing without biosafety constraints, accelerating the discovery and optimisation of new antimicrobial compounds including natural and engineered peptides.

Selected Publications:

  • Kameshwari Chengan, Charlotte Hind, Maria Stanley, Matthew E Wand, Lakshmeesha K Nagappa, Kevin Howland, Tanith Hanson, Rubén Martín-Escolano, Anastasios D Tsaousis, José A Bengoechea, J Mark Sutton, Christopher M Smales, Simon J Moore. A cell-free strategy for the host-specific profiling of antimicrobial sensitivity and resistance. npj Antimicrobials and Resistance 1:16 (2023)
  • Andrew J. Rice, Tien T. Sword, Kameshwari Chengan, Douglas A. Mitchell, Nigel J. Mouncey, Simon J. Moore and Constance B. Bailey. Cell-free synthetic biology for natural product biosynthesis and discovery. Chemical Society Reviews (2025) 54:4314-4352
  • Sebastián Bermúdez-Puga, Meriellen Dias, Iara Lima Reis, Taciana Freire de Oliveira, Sonia Regina Yokomizo de Almeida, Maria Anita Mendes, Simon J Moore, José R Almeida, Carolina Proano-Bolanos, Ricardo Pinheiro de Souza Oliveira. Microscopic and metabolomics analysis of the anti-Listeria activity of natural and engineered cruzioseptins. Biochimie (2024) 225:168-175

Industrial Engagement

We are actively collaborating with industry partners to translate our research into real-world applications. Our partnerships span from engineering speciality chemicals to antimicrobial development. We also offer rapid, innovative solutions through our cell-free platforms (for peptides, proteins, and small molecules) and are committed to delivering impactful research that addresses industry challenges.

Our team is agile and responsive, with dedicated staff to support agreements and collaborations. We welcome new conversations with industry representatives interested in partnership opportunities in engineering chemicals, cell-free systems, and related synthetic biology applications.